I had similar problems with SFS, so much so that I went back to the FFS bundled with OS3.9....
I had a similar problem whereby the Guru struck when my A1200 was accessing an SFS formatted partition. The system would then throw a Guru again upon reboot, so the only way I could get the OS to load was to disable the offending partition in the boot menu, load WB and then repartition using HDToolBox.
Obviously I made sure that SFS was installed as per the instructions, and I made sure that I reformatted the drive after installing the file system but the problem persistantly reoccurred.
SFS seems to "dislike" certain hard drives as my old 420MB Western Digital drive - formatted under SFS seems to survive unscathed every time.