under 3.9 os it should work but HD tool box sucks! I have used a program called RD prep and you should be able to get it off of Aminet.
Have you set up a RDB on this hard drive?
If not; this is what RD prep does best. If you have never set up hard drives before be sure to read all instructions. RD prep is not exactly for the beginner but if you study it ,you will be fine! RD also partitions Hard drives and formats also. Don't format with it use the format tool in workbench.
You, say that this is a new 47 gig ? How many pins 50pin,68pin or 80pin ? What type SCSI 2,3 ultra wide ? If it is a ultra wide (newer type) you will have to move a jumper on the drive. I don't know about the warp engine?What type of SCSI? I do know that the 3000 has SCSI 2 built in and will work with a ultra wide but you need a adapter for the drive.
Ray :-o