I am opting for an Amiga-XE motherboard, as I would like to do performance tests between various software titles running with different specced CPUs.
But as a user I would probably have opted for a G4, the AmigaOne is afterall the first new Amiga motherboard in a decade, no need to get cheap about it. :-D
I am sure there will be Altivec versions of software titles pretty soon. If you look at classic Amiga software and all the different CPU optimised versions out there, I have no reason to think this will not be the case for AmigaOS4 software as well.
@ quenthal
In general a 800 Mhz G4 is significantly faster than a 600 Mhz G3, even without software utilizing Altivec.