Here we go..
I have mentally broken this project into 3 loosely defined stages. I am close to the end of stage one now.
Stage 1:
Modify case heavily to accommodate 128D motherboard
Modify ATX power supply for 128D MB, include 9VAC transformer
Modify internal 1571 from 128D to use in tower
Modify standard PC 5.25 floppy faceplate to use with 1571
Remove DB9, DB15 and DB25 right angle ports and replace with straight panel mount type on 128D MB.
Make and install extension cables to relocate MB ports to back panel
Modify panel mount power switch to add 12V LED and mount to case
Install RGBi to SVGA converter with pass through
Install Composite video to SVGA converter, put output into RBGi converter pass through
Install video select toggle switch to front panel
Install standard audio jack to back panel, wire for pseudo stereo from 128D audio out
Remove original 128D internal 1571 floppy indicator LED and wire to LED on modified 5.25 faceplate
Install "Chicken Head" Commodore case badge
Stage 2:
Create expansion port extension cable
Mount SuperCPU 128 internally
Mount RamLink internally
Add battery for RamLink backup
Mount 1750 ram expansion internally
Add TBD RS232 adapter, possibly Swiftlink Clone, mount DB9 to back panel
Modify and install 1581 internally
Modify PC 3.5 floppy faceplate to use with 1581
Install MMU adapter
Install JiffyDOS for 128D
Remove original 128D MB and 1571 reset switches, wire to momentary switches on front panel
Add buttload of switches and LEDs to front panel, including all for SuperCPU and RamLink plus all 8-11 selection switches for internal drives
Install expansion (cartridge) port pass-through to front 5.25 bay
Stage 3:
Install SBC Pentium-1 internally with CF card
Install MSDOS and 64HDD
More TBD
Well that's it off the top of my head, I'm sure I'm missing a lot and I'm sure things can change some as time goes on. That's a pretty good snapshot at this time :-)